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1

A Molecular Comparison of Plumage and Soil Bacteria Across Biogeographic, Ecological, and Taxonomic Scales

Isabelle-Anne Bisson, Peter P. Marra, Edward H. Burtt, Masoumeh Sikaroodi, Patrick M. Gillevet

Journal:

Microbial Ecology

Year:

2007

Language:

english

File:

PDF, 447 KB

english, 2007

2

A Molecular Comparison of Plumage and Soil Bacteria across Biogeographic, Ecological, and Taxonomic Scales

Isabelle-Anne Bisson, Peter P. Marra, Edward H. Burtt, Jr., Masoumeh Sikaroodi and Patrick M. Gillevet

Journal:

Microbial Ecology

Year:

2007

Language:

english

File:

PDF, 2.37 MB

english, 2007

3

Characterization of the Oral Fungal Microbiome (Mycobiome) in Healthy Individuals

Ghannoum, Mahmoud A., Jurevic, Richard J., Mukherjee, Pranab K., Cui, Fan, Sikaroodi, Masoumeh, Naqvi, Ammar, Gillevet, Patrick M., May, Robin Charles

Journal:

Year:

2010

Language:

english

File:

PDF, 761 KB

english, 2010

4

Analysis of Multitag Pyrosequence Data from Human Cervical Lavage Samples

Ammar Naqvi, Huzefa Rangwala, Greg Spear, Patrick Gillevet

Journal:

Chemistry & Biodiversity

Year:

2010

Language:

english

File:

PDF, 447 KB

english, 2010

5

Quantitative Assessment of the Human Gut Microbiome Using Multitag Pyrosequencing

Patrick Gillevet, Masoumeh Sikaroodi, Ali Keshavarzian, Ece A. Mutlu

Journal:

Chemistry & Biodiversity

Year:

2010

Language:

english

File:

PDF, 664 KB

english, 2010

6

Network-Based Modeling of the Human Gut Microbiome

Ammar Naqvi, Huzefa Rangwala, Ali Keshavarzian, Patrick Gillevet

Journal:

Chemistry & Biodiversity

Year:

2010

Language:

english

File:

PDF, 842 KB

english, 2010

7

An assessment of soil bacterial community structure and physicochemistry in two microtopographic locations of a palustrine forested wetland

Changwoo Ahn, Patrick M. Gillevet, Masoumeh Sikaroodi, Kristin L. Wolf

Journal:

Wetlands Ecology and Management

Year:

2009

Language:

english

File:

PDF, 361 KB

english, 2009

8

Identification of Amoebae Implicated in the Life Cycle of Pfiesteria and Pfiestena-Like Dinoflagellates

MICHAEL T. PEGLAR, THOMAS A NERAD, O. ROGER ANDERSON, PATRICK M. GILLEVET

Journal:

Journal of Eukaryotic Microbiology

Year:

2004

Language:

english

File:

PDF, 3.51 MB

english, 2004

9

A comparison of DNA profiling techniques for monitoring nutrient impact on microbial community composition during bioremediation of petroleum-contaminated soils

DeEtta K Mills, Kristin Fitzgerald, Carol D Litchfield, Patrick M Gillevet

Journal:

Journal of Microbiological Methods

Year:

2003

Language:

english

File:

PDF, 676 KB

english, 2003

10

Analyzing salt-marsh fungal diversity: comparing ARISA fingerprinting with clone sequencing and pyrosequencing

Patrick M. Gillevet, Masoumeh Sikaroodi, Albert P. Torzilli

Journal:

Year:

2009

Language:

english

File:

PDF, 605 KB

english, 2009

11

Ocean currents shape the microbiome of Arctic marine sediments

Hamdan, Leila J, Coffin, Richard B, Sikaroodi, Masoumeh, Greinert, Jens, Treude, Tina, Gillevet, Patrick M

Journal:

The ISME Journal

Year:

2013

Language:

english

File:

PDF, 1.18 MB

english, 2013

12

Characterization of soil bacterial community structure and physicochemical properties in created and natural wetlands

Peralta, Rita M., Ahn, Changwoo, Gillevet, Patrick M.

Journal:

Science of The Total Environment

Year:

2013

Language:

english

File:

PDF, 886 KB

english, 2013

13

A single macrolichen constitutes hundreds of unrecognized species

Lucking, R., Dal-Forno, M., Sikaroodi, M., Gillevet, P. M., Bungartz, F., Moncada, B., Yanez-Ayabaca, A., Chaves, J. L., Coca, L. F., Lawrey, J. D.

Journal:

Proceedings of the National Academy of Sciences

Year:

2014

Language:

english

File:

PDF, 1.34 MB

english, 2014

14

Decompensated cirrhosis and microbiome interpretation

Bajaj, Jasmohan S., Betrapally, Naga S., Gillevet, Patrick M.

Journal:

Year:

2015

Language:

english

File:

PDF, 159 KB

english, 2015

15

Gut microbiota drive the development of neuro-inflammatory response in cirrhosis

Kang, Dae Joong, Betrapally, Naga S, Ghosh, Siddhartha A, Sartor, R Balfour, Hylemon, Phillip B, Gillevet, Patrick M, Sanyal, Arun J, Heuman, Douglas M, Carl, Daniel, Zhou, Huiping, Liu, Runping, Wang

Journal:

Year:

2016

Language:

english

File:

PDF, 3.56 MB

english, 2016

16

Alterations in the amounts of microbial metabolites in different regions of the mouse large intestine using variably fermentable fibres

Kaur, Amandeep, Tuncil, Yunus E., Sikaroodi, Masoumeh, Gillevet, Patrick, Patterson, John A., Keshavarzian, Ali, Hamaker, Bruce R.

Journal:

Bioactive Carbohydrates and Dietary Fibre

Year:

2018

Language:

english

File:

PDF, 631 KB

english, 2018

17

Correction: Almeida-Dalmet, S.; et al. Differential Gene Expression in Response to Salinity and Temperature in a Haloarcula Strain from Great Salt Lake, Utah. Genes 2017, 9, 52

Almeida-Dalmet, Swati, Litchfield, Carol, Gillevet, Patrick, Baxter, Bonnie

Journal:

Year:

2018

Language:

english

File:

PDF, 498 KB

english, 2018

18

Assessing Microbial Community Diversity Using Amplicon Length Heterogeneity Polymerase Chain Reaction

Mills, DeEtta K., Entry, James A., Gillevet, Patrick M., Mathee, Kalai

Journal:

Soil Science Society of America Journal

Year:

2007

Language:

english

File:

PDF, 503 KB

english, 2007

19

Starch-entrapped microspheres extend in vitro fecal fermentation, increase butyrate production, and influence microbiota pattern

Devin J. Rose, Ali Keshavarzian, John A. Patterson, Mahesh Venkatachalam, Patrick Gillevet, Bruce R. Hamaker

Journal:

Molecular Nutrition & Food Research

Year:

2009

Language:

english

File:

PDF, 805 KB

english, 2009

20

A Population Survey of Members of the PhylumBacteroidetesIsolated from Salt Marsh Sediments along the East Coast of the United States

C. Lydell, L. Dowell, M. Sikaroodi, P. Gillevet, D. Emerson

Journal:

Microbial Ecology

Year:

2004

Language:

english

File:

PDF, 334 KB

english, 2004

21

Variation in Plumage Microbiota Depends on Season and Migration

Isabelle-A. Bisson, Peter P. Marra, Edward H. Burtt Jr, Masoumeh Sikaroodi, Patrick M. Gillevet

Journal:

Microbial Ecology

Year:

2009

Language:

english

File:

PDF, 190 KB

english, 2009

22

Etiology of ulcerative lesions of Atlantic menhaden (Brevoortia tyrannus) from James River, Virginia

Stanley R. Webb, Gregory C. Garman, Stephen P. McIninch, Thomas A. Nerad, Michael T. Peglar, Patrick M. Gillevet, Bonnie L. Brown

Journal:

Parasitology Research

Year:

2005

Language:

english

File:

PDF, 484 KB

english, 2005

23

Phosphorylation of proteolytically-nicked rat hepatic acetyl-coa carboxylase

P.M. Gillevet, K. Dakashinamurti

Journal:

International Journal of Biochemistry

Year:

1983

Language:

english

File:

PDF, 466 KB

english, 1983

24

Phylogenetic relationships of the lower Caenogastropoda (Mollusca, Gastropoda, Architaenioglossa, Campaniloidea, Cerithioidea) as determined by partial 18s rDNA sequences

M. G. HARASEWYCH, S. LAURA ADAMKEWICZ, MATTHEW PLASSMEYER, PATRICK M. GILLEVET

Journal:

Zoologica Scripta

Year:

1998

Language:

english

File:

PDF, 1.35 MB

english, 1998

25

Intestinal Dysbiosis: A Possible Mechanism of Alcohol-Induced Endotoxemia and Alcoholic Steatohepatitis in Rats

Ece Mutlu, Ali Keshavarzian, Phillip Engen, Christopher B. Forsyth, Masoumeh Sikaroodi, Patrick Gillevet

Journal:

Alcoholism: Clinical and Experimental Research

Year:

2009

Language:

english

File:

PDF, 715 KB

english, 2009

26

Two New Small-Subunit Ribosomal RNA Gene Lineages within the Subclass Gymnamoebia

MICHAEL T. PEGLAR, LINDA A. AMARAL ZETTLER, O. ROGER ANDERSON, THOMAS A. NERAD, PATRICK M. GILLEVET, THOMAS E. MULLEN, SALVATORE FRASCA JR., JEFFREY D. SILBERMAN, CHARLES J. O'KELLY, MITCHELL L. SOGIN

Journal:

Journal of Eukaryotic Microbiology

Year:

2003

Language:

english

File:

PDF, 1.87 MB

english, 2003

27

An assessment of the hypervariable domains of the 16S rRNA genes for their value in determining microbial community diversity: the paradox of traditional ecological indices

DeEtta K. Mills, James A. Entry, Joshua D. Voss, Patrick M. Gillevet, Kalai Mathee

Journal:

FEMS Microbiology Ecology

Year:

2006

Language:

english

File:

PDF, 103 KB

english, 2006

28

Geomicrobial characterization of gas hydrate-bearing sediments along the mid-Chilean margin

Leila J. Hamdan, Patrick M. Gillevet, Masoumeh Sikaroodi, John W. Pohlman, Rebecca E. Plummer, Richard B. Coffin

Journal:

FEMS Microbiology Ecology

Year:

2008

Language:

english

File:

PDF, 372 KB

english, 2008

29

Diversity and biogeochemical structuring of bacterial communities across the Porangahau ridge accretionary prism, New Zealand

Leila J. Hamdan, Patrick M. Gillevet, John W. Pohlman, Masoumeh Sikaroodi, Jens Greinert, Richard B. Coffin

Journal:

FEMS Microbiology Ecology

Year:

2011

Language:

english

File:

PDF, 783 KB

english, 2011

30

10.1038/35582

Hilton, G. C., Martinis, John M., Wollman, D. A., Irwin, K. D., Dulcie, L. L., Gerber, Daniel, Gillevet, Patrick M., Twerenbold, Damian

Journal:

Year:

1998

Language:

english

File:

PDF, 585 KB

english, 1998

31

Exploring the Mycoplasma capricolum genome: a minimal cell reveals its physiology

Peer Bork, Christos Ouzounis, Georg Casari, Reinhard Schneider, Chris Sander, Maureen Dolan, Walter Gilbert, Pat M. Gillevet

Journal:

Molecular Microbiology

Year:

1995

Language:

english

File:

PDF, 3.43 MB

english, 1995

32

Microbial diversity and complexity in hypersaline environments: A preliminary assessment

CD Litchfield, PM Gillevet

Journal:

Journal of Industrial Microbiology & Biotechnology

Year:

2002

Language:

english

File:

PDF, 122 KB

english, 2002

33

Halorubrum californiense sp. nov., an extreme archaeal halophile isolated from a crystallizer pond at a solar salt plant in California, USA

Pesenti, P. T., Sikaroodi, M., Gillevet, P. M., Sanchez-Porro, C., Ventosa, A., Litchfield, C. D.

Journal:

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Year:

2008

Language:

english

File:

PDF, 122 KB

english, 2008

34

Colonic microbiome is altered in alcoholism

Mutlu, E. A., Gillevet, P. M., Rangwala, H., Sikaroodi, M., Naqvi, A., Engen, P. A., Kwasny, M., Lau, C. K., Keshavarzian, A.

Journal:

AJP Gastrointestinal and Liver Physiology

Year:

2012

Language:

english

File:

PDF, 967 KB

english, 2012

35

Rat-liver fatty-acid-synthesizing complex

P. M. Gillevet, K. Dakshinamurti

Journal:

Bioscience Reports

Year:

1982

Language:

english

File:

PDF, 642 KB

english, 1982

36

A longitudinal systems biology analysis of lactulose withdrawal in hepatic encephalopathy

Jasmohan S. Bajaj, Patrick M. Gillevet, Neeral R. Patel, Vishwadeep Ahluwalia, Jason M Ridlon, Birgit Kettenmann, Christine M. Schubert, Masoumeh Sikaroodi, Douglas M. Heuman, Mary M. E. Crossey, Debu

Journal:

Metabolic Brain Disease

Year:

2012

Language:

english

File:

PDF, 432 KB

english, 2012

37

Current concept of HIV pathogenesis in the female genital tract

A. Landay, G. Spear, P. Mirmonsef, P. Gillevet, M.R. Zariffard, D. Gilbert, D. Burgad

Journal:

Journal of Reproductive Immunology

Year:

2012

Language:

english

File:

PDF, 73 KB

english, 2012

38

Current concept of HIV pathogenesis in the female genital tract

G. Spear, P. Mirmonsef, P. Gillevet, M.R. Zariffard, D. Gilbert, D. Burgad, A.L. Landay

Journal:

Journal of Reproductive Immunology

Year:

2012

Language:

english

File:

PDF, 73 KB

english, 2012

39

High concentration of basidiolichens in a single family of agaricoid mushrooms (Basidiomycota: Agaricales: Hygrophoraceae)

James D. Lawrey, Robert Lücking, Harrie J.M. Sipman, José L. Chaves, Scott A. Redhead, Frank Bungartz, Masoumeh Sikaroodi, Patrick M. Gillevet

Journal:

Mycological Research

Year:

2009

Language:

english

File:

PDF, 3.65 MB

english, 2009

40

A Molecular Reassessment of the Leptomyxid Amoebae

Linda A. Amaral Zettler, Thomas A. Nerad, Charles J. O'Kelly, Michael T. Peglar, Michael T. Peglar, Patrick M. Gillevet, Jeffrey D. Silberman, Mitchell L. Sogin

Journal:

Year:

2000

Language:

english

File:

PDF, 90 KB

english, 2000

41

Remarkable nutritional diversity of basidiomycetes in the Corticiales, including a new foliicolous species of Marchandiomyces (anamorphic Basidiomycota, Corticiaceae) from Australia

Lawrey, J. D., Diederich, P., Sikaroodi, M., Gillevet, P. M.

Journal:

American Journal of Botany

Year:

2008

Language:

english

File:

PDF, 1.95 MB

english, 2008

42

Do lichens domesticate photobionts like farmers domesticate crops? Evidence from a previously unrecognized lineage of filamentous cyanobacteria

Lucking, R., Lawrey, J. D., Sikaroodi, M., Gillevet, P. M., Chaves, J. L., Sipman, H. J. M., Bungartz, F.

Journal:

American Journal of Botany

Year:

2009

Language:

english

File:

PDF, 1.96 MB

english, 2009

43

A new lineage of lichenized basidiomycetes inferred from a two-gene phylogeny: The Lepidostromataceae with three species from the tropics

Ertz, D., Lawrey, J. D., Sikaroodi, M., Gillevet, P. M., Fischer, E., Killmann, D., Serusiaux, E.

Journal:

American Journal of Botany

Year:

2008

Language:

english

File:

PDF, 1.41 MB

english, 2008

44

Mapping and Characterization of Novel (CAG)nRepeat cDNAs from Adult Human Brain Derived by the Oligo Capture Method

P.H. Reddy, Elaine Stockburger, Patrick Gillevet, Danilo A. Tagle

Journal:

Year:

1997

Language:

english

File:

PDF, 202 KB

english, 1997

45

Novel fluorescent protein from Hydnophora rigida possess cyano emission

H. Bokhari, C. Smith, K. Veerendra, J. Sivaraman, M. Sikaroodi, P. Gillevet

Journal:

Biochemical and Biophysical Research Communications

Year:

2010

Language:

english

File:

PDF, 596 KB

english, 2010

46

Molecular characterization of microbial communities in treatment microcosm wetlands as influenced by macrophytes and phosphorus loading

C. Ahn, P.M. Gillevet, M. Sikaroodi

Journal:

Ecological Indicators

Year:

2007

Language:

english

File:

PDF, 926 KB

english, 2007

47

The obligately lichenicolous genus Lichenoconium represents a novel lineage in the Dothideomycetes

James D. Lawrey, Paul Diederich, Matthew P. Nelsen, Masoumeh Sikaroodi, Patrick M. Gillevet, A. Maarten Brand, Pieter van den Boom

Journal:

Year:

2011

Language:

english

File:

PDF, 2.54 MB

english, 2011

48

An ecoinformatics tool for microbial community studies: Supervised classification of Amplicon Length Heterogeneity (ALH) profiles of 16S rRNA

Chengyong Yang, DeEtta Mills, Kalai Mathee, Yong Wang, Krish Jayachandran, Masoumeh Sikaroodi, Patrick Gillevet, Jim Entry, Giri Narasimhan

Journal:

Journal of Microbiological Methods

Year:

2006

Language:

english

File:

PDF, 185 KB

english, 2006

49

151 URINARY MAGNETIC RESONANCE SPECTROSCOPY IN PATIENTS WITH HEPATIC ENCEPHALOPATHY: CITRATE CORRELATES WITH ASYMMETRIC DIMETHYLARGININE AND GUT MICROBIAL SPECIES AND CAN PREDICT RECURRENCE AFTER LACTULOSE DISCONTINUATION

J. Bajaj, M.J. McPhail, D.M. Heuman, D. Bell, P. Gillevet, M. Sikaroodi, A.J. Sanyal, M.I. Sharif, J. Ridlon, P. Hylemon, S. Taylor-Robinson

Journal:

Journal of Hepatology

Year:

2010

Language:

english

File:

PDF, 49 KB

english, 2010

50

116 THE GUT MICROBIOME MODULATES FECAL BILE ACID PROFILE IN PATIENTS WITH CIRRHOSIS

G. Kakiyama, J.M. Ridlon, P.B. Hylemon, W.M. Pandak, P.M. Gillevet, D.M. Heuman, K. Daita, J.S. Bajaj

Journal:

Journal of Hepatology

Year:

2012

Language:

english

File:

PDF, 61 KB

english, 2012